PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0398.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 213aa    MW: 23593.6 Da    PI: 5.8203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0398.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-172271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr +k +g+Wv+eIr p++   r r++lg++++a +Aa+a +aa  +l+g
  Kaladp0008s0398.1.p 22 LYKGVRKRK-WGKWVSEIRLPNS---RDRIWLGSYDSAVKAARAFDAALYCLRG 71
                         59****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-262181No hitNo description
Gene3DG3DSA:3.30.730.109.0E-282281IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-192281IPR016177DNA-binding domain
SMARTSM003804.6E-312285IPR001471AP2/ERF domain
PROSITE profilePS5103220.7052279IPR001471AP2/ERF domain
PfamPF008471.2E-92371IPR001471AP2/ERF domain
PRINTSPR003672.0E-82334IPR001471AP2/ERF domain
PRINTSPR003672.0E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASDSCSSSH HGREDSSSSS KLYKGVRKRK WGKWVSEIRL PNSRDRIWLG SYDSAVKAAR  60
AFDAALYCLR GSGAKFNFPH SPPDMRITRP LTHAEIQEIA TSYANEEPRS DGGAEHQPLS  120
PSSQFGELNL DHNNSSNSSS GVWSGNESQI DWPLWNLLDN VPDYRYPSAE YNSFLPYQPA  180
DPQSSFGQSV YDSGHDAGGE GFSQHNLSLW DF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324785.14e-47hypothetical protein POPTR_0018s08320g
TrEMBLB9IKF64e-47B9IKF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08320.11e-46(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-41ERF family protein